{"id":"https://openalex.org/W4317826916","doi":"https://doi.org/10.1109/iv56949.2022.00069","title":"Interactive Web-based 3D Viewer for Multidimensional Microscope Imaging Modalities","display_name":"Interactive Web-based 3D Viewer for Multidimensional Microscope Imaging Modalities","publication_year":2022,"publication_date":"2022-07-01","ids":{"openalex":"https://openalex.org/W4317826916","doi":"https://doi.org/10.1109/iv56949.2022.00069"},"language":"en","primary_location":{"id":"doi:10.1109/iv56949.2022.00069","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/iv56949.2022.00069","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 26th International Conference Information Visualisation (IV)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014186139","display_name":"Yubraj Gupta","orcid":"https://orcid.org/0000-0002-8404-5411"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Yubraj Gupta","raw_affiliation_strings":["University of Aveiro,Department of Computer Engineering,Aveiro,Portugal","Department of Computer Engineering, University of Aveiro, Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"University of Aveiro,Department of Computer Engineering,Aveiro,Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"Department of Computer Engineering, University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087684353","display_name":"Rodrigo Escobar D\u00edaz Guerrero","orcid":"https://orcid.org/0000-0002-8327-1169"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Rodrigo E. D. Guerrero","raw_affiliation_strings":["University of Aveiro,Department of Computer Engineering,Aveiro,Portugal","Department of Computer Engineering, University of Aveiro, Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"University of Aveiro,Department of Computer Engineering,Aveiro,Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"Department of Computer Engineering, University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005228887","display_name":"Carlos Costa","orcid":"https://orcid.org/0000-0002-2707-5331"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Carlos Costa","raw_affiliation_strings":["University of Aveiro,Department of Computer Engineering,Aveiro,Portugal","Department of Computer Engineering, University of Aveiro, Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"University of Aveiro,Department of Computer Engineering,Aveiro,Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"Department of Computer Engineering, University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016257681","display_name":"Rui Jesus","orcid":"https://orcid.org/0000-0003-1869-6491"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rui Jesus","raw_affiliation_strings":["BMD Software,Aveiro,Portugal","BMD Software, Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"BMD Software,Aveiro,Portugal","institution_ids":[]},{"raw_affiliation_string":"BMD Software, Aveiro, Portugal","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004718636","display_name":"Eduardo Pinho","orcid":"https://orcid.org/0000-0002-4397-8792"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eduardo Pinho","raw_affiliation_strings":["BMD Software,Aveiro,Portugal","BMD Software, Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"BMD Software,Aveiro,Portugal","institution_ids":[]},{"raw_affiliation_string":"BMD Software, Aveiro, Portugal","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021093096","display_name":"Lu\u00eds A. Basti\u00e3o Silva","orcid":"https://orcid.org/0000-0001-8513-7185"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Luis A. Bastiao Silva","raw_affiliation_strings":["BMD Software,Aveiro,Portugal","BMD Software, Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"BMD Software,Aveiro,Portugal","institution_ids":[]},{"raw_affiliation_string":"BMD Software, Aveiro, Portugal","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5014186139"],"corresponding_institution_ids":["https://openalex.org/I60858718"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.10536314,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"11","issue":null,"first_page":"379","last_page":"384"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11897","display_name":"Digital Holography and Microscopy","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8634452819824219},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7275263071060181},{"id":"https://openalex.org/keywords/volume-rendering","display_name":"Volume rendering","score":0.6974201798439026},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.54536372423172},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5325514078140259},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.5172789096832275},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.46500882506370544},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4620944559574127},{"id":"https://openalex.org/keywords/scanner","display_name":"Scanner","score":0.4186254143714905},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36362043023109436},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.32187619805336}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8634452819824219},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7275263071060181},{"id":"https://openalex.org/C30769735","wikidata":"https://www.wikidata.org/wiki/Q2165951","display_name":"Volume rendering","level":3,"score":0.6974201798439026},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.54536372423172},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5325514078140259},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.5172789096832275},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.46500882506370544},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4620944559574127},{"id":"https://openalex.org/C2779751349","wikidata":"https://www.wikidata.org/wiki/Q1474480","display_name":"Scanner","level":2,"score":0.4186254143714905},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36362043023109436},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.32187619805336},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iv56949.2022.00069","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/iv56949.2022.00069","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 26th International Conference Information Visualisation (IV)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5699999928474426,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W62096885","https://openalex.org/W1976443465","https://openalex.org/W1989396876","https://openalex.org/W2018227909","https://openalex.org/W2094944422","https://openalex.org/W2127647622","https://openalex.org/W2138825607","https://openalex.org/W2156755609","https://openalex.org/W2163314583","https://openalex.org/W2167279371","https://openalex.org/W2183389629","https://openalex.org/W2232735501","https://openalex.org/W2297664645","https://openalex.org/W4220773713"],"related_works":["https://openalex.org/W4245233074","https://openalex.org/W4232857084","https://openalex.org/W1517555227","https://openalex.org/W762151464","https://openalex.org/W2389610024","https://openalex.org/W4321437783","https://openalex.org/W2009088896","https://openalex.org/W4233522791","https://openalex.org/W2544035110","https://openalex.org/W2382125321"],"abstract_inverted_index":{"Recent":[0],"advancements":[1],"in":[2,82],"the":[3,46,70,83,101,112],"acquisition":[4],"of":[5,36,49,72,85,103,116,145,168],"digital":[6],"imaging":[7,66,129],"modalities":[8],"with":[9,29],"high-throughput":[10],"technologies,":[11],"such":[12],"as":[13,77,139],"confocal":[14],"laser":[15],"scanner":[16],"microscopy":[17,24,166],"(CLSM)":[18],"and":[19,54,96,114,126,141,164],"focused-ion":[20],"beam":[21],"scanning":[22],"electron":[23],"(FIB-SEM),":[25],"are":[26],"providing":[27],"researchers":[28],"unprecedented":[30],"opportunities":[31],"to":[32,44,57,93,153],"collect":[33],"massive":[34],"amounts":[35],"multidimensional":[37,64,120],"datasets.":[38],"This":[39],"data":[40,67],"can":[41],"be":[42],"used":[43],"visualize":[45],"internal":[47],"structure":[48],"tiny":[50],"particles":[51],"(mostly":[52],"cells":[53],"organisms)":[55],"or":[56],"develop":[58],"analytic":[59],"algorithms.":[60],"Visualizing":[61],"newly":[62],"obtained":[63],"microscope":[65,128],"is":[68],"beyond":[69],"capabilities":[71],"traditional":[73],"3D":[74,121,133,150],"visualization":[75,105,122,134,146],"packages,":[76],"it":[78],"carries":[79],"much":[80],"information":[81],"form":[84],"additional":[86],"dimensions.":[87],"Typically,":[88],"these":[89],"extra":[90],"dimensions":[91],"correspond":[92],"space,":[94],"time,":[95],"channels,":[97],"which":[98],"has":[99],"driven":[100],"development":[102],"new":[104],"applications.":[106],"In":[107],"this":[108],"article,":[109],"we":[110],"describe":[111],"design":[113],"implementation":[115],"an":[117],"interactive":[118],"web-based":[119],"tool":[123],"for":[124],"CLSM":[125],"FIB-SEM":[127],"modalities.":[130,170],"The":[131,157],"proposed":[132],"application":[135],"accepts":[136],"DICOM":[137],"files":[138],"input":[140],"provides":[142],"a":[143],"variety":[144],"choices":[147],"ranging":[148],"from":[149],"volume/surface":[151],"rendering":[152,165],"multiplanar":[154],"reconstruction":[155],"approaches.":[156],"solution":[158],"performance":[159],"was":[160],"tested":[161],"by":[162],"uploading":[163],"images":[167],"distinct":[169]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
