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Review
. 2014 Feb 25:5:71.
doi: 10.3389/fimmu.2014.00071. eCollection 2014.

Regulation of the NF-κB-Mediated Transcription of Inflammatory Genes

Affiliations
Review

Regulation of the NF-κB-Mediated Transcription of Inflammatory Genes

Dev Bhatt et al. Front Immunol. .

Abstract

The NF-κB family of transcription factors plays a central role in the inducible expression of inflammatory genes during the immune response, and the proper regulation of these genes is a critical factor in the maintenance of immune homeostasis. The chromatin environment at stimulus-responsive NF-κB sites is a major determinant in transcription factor binding, and dynamic alteration of the chromatin state to facilitate transcription factor binding is a key regulatory mechanism. NF-κB is in turn able to influence the chromatin state through a variety of mechanisms, including the recruitment of chromatin modifying co-activator complexes such as p300, the competitive eviction of negative chromatin modifications, and the recruitment of components of the general transcriptional machinery. Frequently, the selective interaction with these co-activators is dependent on specific post-translational modification of NF-κB subunits. Finally, the mechanisms of inducible NF-κB activity in different immune cell types seem to be largely conserved. The diversity of cell-specific NF-κB-mediated transcriptional programs is established at the chromatin level during cell differentiation by lineage-defining transcription factors. These factors generate and maintain a cell-specific chromatin landscape that is accessible to NF-κB, thus restricting the inducible transcriptional response to a cell-appropriate output.

Keywords: NF-kappaB; chromatin; gene expression; signaling; transcription; transcription factor.

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Figures

Figure 1
Figure 1
Chromatin state at different promoter classes dictates the kinetics of the NF-kB response. (A) CpG-island promoters (red dashed lines) are characterized by high levels of histone H3K4me3 and more highly accessible chromatin. This allows for rapid transcriptional induction by NF-kB, independent of the need for any SWI/SNF-dependent nucleosome remodeling. (B) Low-CpG promoters contain inactive and inaccessible chromatin signatures in the basal state, which forms a barrier to NF-kB binding and transcriptional activation. SWI/SNF complexes must be recruited to these genes by additional factors such as IRF proteins in order to facilitate chromatin remodeling. Upon chromatin remodeling, NF-kB can bind and induce transcription.
Figure 2
Figure 2
Chromatin state at different promoter classes dictates the kinetics of the NF-kB response. (A) Release of NF-kB dimers through appropriate stimulation is linked to phosphorylation of p65 at serine 276 in the cytoplasm by PKAc or in the nucleus by MSK1/2. Phosphorylated p65 preferentially interacts with CBP/p300 co-activator complexes, displacing its latent binding to HDAC complexes. The specific interaction of p65 and p300 results in the acetylation of p65 itself and of surrounding histones, and subsequent transcriptional induction. (B) The acetylation of p65 on K310 promotes the recruitment of the positive elongation factors Brd4 and P-TEFb, which can phosphorylate the polymerase C-terminus. p65 can also recruit GCN5 acetyltransferase complexes, leading to promoter acetylation, Brd4-P-TEFb recruitment, and polymerase elongation.

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