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What we're talking about Very Bad Science in Open-Access Journals Friday, October 4, 2013

Very Bad Science in Open-Access Journals

John Bohannon of Science magazine has developed a fake science paper generator. He wrote a little, simple program, pushes a button, and gets hundreds of phony papers, each unique with different authors and different molecules and different cancers, in a format that’s painfully familiar to anyone who has read any cancer journals recently. The goal…

Who’s Afraid of Peer Review? by John Bohannon is about his experiments in sending a fatally-flawed paper to a variety of open-access journals, and the appalling lack of rejections that followed (note that PLOS-ONE correctly rejected it). To make it not too easy to reject just based on “I can’t find your institute on the…

While it has not generally been my practice to do year end review posts, artificially trying to tie the various and disparate strands of my blogging habits together into some sort of coherent story, I think for this year it’s worth doing. And that’s because my blogging year did seem to have a coherent theme…

As anti-vaccinationists, global-warming denialists, and young-earth creationists know, it's not too hard to fool the public with bogus science. But a new exercise by John Bohannon of Science suggests it's not too hard to fool professionals either. Bohannon generated unique iterations of a purposely flawed paper, playing Mad Libs with the formula "Molecule X from lichen species Y inhibits the growth of cancer cell Z." He sent his fake papers to 304 open-access journals, and it was accepted by more than half. Some of these journals have suspicious credentials, but others are published by Elsevier, Wolters Kluwer, and Sage. Only PLOS ONE distinguished itself by identifying some of the paper's problems and rejecting it on the basis of its scientific quality. PZ Myers writes that one cause of this widespread negligence is money; since many open-access journals charge authors to have their papers published, "the journal editors profit by accepting any papers, the more the better." But PZ asks, why didn't Bohannon form a control group by sending his fake papers to traditional journals as well? On Stoat, William M. Connolley writes that pay-to-publish journals threaten to "pollute the science-o-sphere with trash, and/or rip of poor authors," and if you submit a real paper to one of these journals "you’ve shot yourself in the foot."

Channel Surfing

Life Science

John Bohannon of Science magazine has developed a fake science paper generator. He wrote a little, simple program, pushes a button, and gets hundreds of phony papers, each unique with different authors and different molecules and different cancers, in a format that’s painfully familiar to anyone who has read any cancer journals recently. The goal…

The latest celebrity fad is getting pet lorises. They’re adorable! They have such big eyes and a funny face! And look, they like to get tickled! Aww, so cute. I want one. At least, that seems to be the typical response in followers of pop culture. Anna Nekaris, a professor of primate conservation at Oxford…

This cat is going to be insufferable You may have heard we’ve got this satanic feline padding about the house now, getting into mischief — she has discovered my collection of cephalopodiana, and her favorite toy is one of my stuffed octopuses that she wrestles and bats around the floor. It’s like she’s rubbing it…

Physical Science

I almost killed the Pip last week. By accident, of course, but I do mean that literally. His day care was closed for the day, so I took him out to the store to avoid a freakout when Mommy left. I was heading into the store with him in one arm and a hot cup…

By F. Mark Modzelewski The USA Science & Engineering Festival, supported by presenting host sponsor Lockheed Martin, is pleased to announce the launch of the 2013/14 school year “Nifty Fifty,” an innovative program that brings over 150 noted science and engineering professionals to schools across New York, California and the Washington, D.C. metro area to speak…

We cleared a bunch of space in our deep storage area over the summer, and one of the things we found was a box full of old student theses from the 1950′s and 1960′s. The library already had copies of them, but I thought it was sort of cool to have a look into the…

Environment

The fifth assessment report of the Intergovernmental Panel on Climate Change was released last week, saying that global warming is occurring without a doubt, and human activity is extremely likely to be the cause.  Greg Laden shares a number of graphics from the report, summarizing “It is getting hotter. It is getting wetter, or dryer,…

Who’s Afraid of Peer Review? by John Bohannon is about his experiments in sending a fatally-flawed paper to a variety of open-access journals, and the appalling lack of rejections that followed (note that PLOS-ONE correctly rejected it). To make it not too easy to reject just based on “I can’t find your institute on the…

  Researchers from the Chinese Academy of Sciences and The University of Queensland have discovered a venom from centipedes capable of blocking pain more effectively than morphine! According to the study authors, centipedes have appeared in the fossil records as far back as 430 million years. They are also one of the first land-dwelling creatures…

Humanities

While OSHA has never been the most robustly funded federal agency, its efforts and regulatory authority have helped prevent countless deaths, injuries and illnesses on the job. However, recent budget cuts and future budget cut proposals threaten those gains, and it’s no stretch to say that worker health and safety hang in the balance.

“Early Clovis knew their land and stone” — Of course they bloody did! Finding a site with good obsidian would have been like striking oil today. People would have kept track of the site, and traded with far-off communities. For humans who want to make more random (or at least thoroughly scrambled) choices, try this…

About the time of Alexander the Great in the 4th century BC, Greek writers started to offer lists of Seven Wonders that the well-read traveller should see. In the 2nd century BC the Hanging Gardens of Babylon began to show up on such lists. The location of Babylon is well known: on the River Euphrates…

Education

  Researchers from the Chinese Academy of Sciences and The University of Queensland have discovered a venom from centipedes capable of blocking pain more effectively than morphine! According to the study authors, centipedes have appeared in the fossil records as far back as 430 million years. They are also one of the first land-dwelling creatures…

By F. Mark Modzelewski The USA Science & Engineering Festival, supported by presenting host sponsor Lockheed Martin, is pleased to announce the launch of the 2013/14 school year “Nifty Fifty,” an innovative program that brings over 150 noted science and engineering professionals to schools across New York, California and the Washington, D.C. metro area to speak…

X-STEM - presented by Northrop Grumman Foundation and MedImmune - is an Extreme STEM symposium for elementary through high school students featuring interactive presentations by an exclusive group of visionaries who aim to empower and inspire kids about careers in science, technology, engineering and mathematics (STEM). These top STEM role models and industry leaders are sure to ignite your students’ curiosity through…

Politics

While OSHA has never been the most robustly funded federal agency, its efforts and regulatory authority have helped prevent countless deaths, injuries and illnesses on the job. However, recent budget cuts and future budget cut proposals threaten those gains, and it’s no stretch to say that worker health and safety hang in the balance.

A few days ago I wrote a note to each of several trusted fellow political activists asking them to provide me with a short list of which of the many candidates running for Mayor of Minneapolis they would feel comfortable with winning this important race. I did not ask for their number one choice, but…

The federal government shutdown has put a halt on most workplace safety inspections. It’s another important public health program adversely affected by the spending showdown.

Medicine

No matter how much I try, it seems that I can’t escape blogging about Stanislaw Burzynski. Regular readers here are familiar with Dr. Burzynski, the “maverick” cancer doctor (he’s not an oncologist) who claims that peptides he’s isolated from urine and now synthesizes in his lab and manufacturing facility are highly effective anticancer drugs, so…

  Researchers from the Chinese Academy of Sciences and The University of Queensland have discovered a venom from centipedes capable of blocking pain more effectively than morphine! According to the study authors, centipedes have appeared in the fossil records as far back as 430 million years. They are also one of the first land-dwelling creatures…

Houston Fire Captain William Dowling spent seven weeks in intensive care recovering from injuries suffered in one of the deadliest fires in Houston history. Many more months of rehabilitation await him.

Brain & Behavior

  Researchers from the Chinese Academy of Sciences and The University of Queensland have discovered a venom from centipedes capable of blocking pain more effectively than morphine! According to the study authors, centipedes have appeared in the fossil records as far back as 430 million years. They are also one of the first land-dwelling creatures…

Eran Levin, a postdoctoral researcher at the University of Arizona studies Hawk Moths. He used a technique called backlighting to catch them and in the process catches numerous other insects as well. Moths navigate by keeping bright objects like the moon and stars at a constant angle. It turns out that artificial light disrupts the…

The Amazon region is notoriously deficient in sodium because of its large distance from the ocean and because the Andes mountains block the delivery of windblown minerals from the West. Some minerals travel from the east, but much of the air is cleaned by rain before the minerals can make it to the western region…

Technology

  Researchers from the Chinese Academy of Sciences and The University of Queensland have discovered a venom from centipedes capable of blocking pain more effectively than morphine! According to the study authors, centipedes have appeared in the fossil records as far back as 430 million years. They are also one of the first land-dwelling creatures…

The Bottleneck Years by H.E. Taylor Chapter 59 Table of Contents Chapter 61 Chapter 60 L1 Roustabouts, February 15, 2058 The L1 crew were not like the moon colonists. They were cowboys. We didn’t get up-close and web-personal with them. The corporate imagery around them played up rugged individualism and avoided any mention of colonization.…

Guest Blog from the USA Science & Engineering Festival Sponsor United States Air Force The U.S. Air Force and GOOD are pleased to announce the start of the  second project in The Air Force Collaboratory, an interactive online platform  that invites science, technology, engineering and mathematics (STEM)  inclined students, educators and innovators to solve some of…

Information Science

First, get a list of over a dozen things you want to say. They don’t have to be true, and many, even most, of them can be versions of each other. Then, when you are in the debate, do this: Scientist: “If there’s one thing you should take away from this discussion, it’s… Denialist [interrupting]:…

I have a son who’s starting his second year as a physics undergrad. As you can imagine, I occasionally pass along a link or two to him pointing to stuff on the web I think he might find particularly interesting or useful. Thinking on that fact, I surmised that perhaps other science students might find…

Last night I attended the Lane Anderson Award dinner where this year’s winners were announced. A huge congratulations to all the winners and nominees and sincere thanks to the organizers for inviting me to such a wonderful event. Here is the press release from last night: $10,000 Lane Anderson Award Winners Celebrating the Best Science…

Jobs

While OSHA has never been the most robustly funded federal agency, its efforts and regulatory authority have helped prevent countless deaths, injuries and illnesses on the job. However, recent budget cuts and future budget cut proposals threaten those gains, and it’s no stretch to say that worker health and safety hang in the balance.

Houston Fire Captain William Dowling spent seven weeks in intensive care recovering from injuries suffered in one of the deadliest fires in Houston history. Many more months of rehabilitation await him.

The federal government shutdown has put a halt on most workplace safety inspections. It’s another important public health program adversely affected by the spending showdown.